alpine / aports / problem installing R package : nlmixr
I'm having issues when attempting to install some R packages. I'm not really sure, but from reading through the error log it seems R or its internal compiler is looking for a C configuration file. Apologies on the formatting - I'm not quite sure the best way to format a block of console IO. Here's the R REPL IO of the install request:
`rlyeh:~$ R
R version 4.2.1 (2022-06-23) -- "Funny-Looking Kid" Copyright (C) 2022 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-musl (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R.
[Previously saved workspace restored]
install.packages("nlmixr") Installing package into ‘/home/deepdark/R/x86_64-pc-linux-musl-library/4.2’ (as ‘lib’ is unspecified) --- Please select a CRAN mirror for use in this session --- Secure CRAN mirrors
1: 0-Cloud [https] 2: Australia (Canberra) [https] 3: Australia (Melbourne 1) [https] 4: Australia (Melbourne 2) [https] 5: Australia (Perth) [https] 6: Austria [https] 7: Belgium (Brussels) [https] 8: Brazil (PR) [https] 9: Brazil (RJ) [https] 10: Brazil (SP 1) [https] 11: Brazil (SP 2) [https] 12: Bulgaria [https] 13: Canada (MB) [https] 14: Canada (ON 3) [https] 15: Chile (Santiago) [https] 16: China (Beijing 2) [https] 17: China (Beijing 3) [https] 18: China (Hefei) [https] 19: China (Hong Kong) [https] 20: China (Guangzhou) [https] 21: China (Lanzhou) [https] 22: China (Nanjing) [https] 23: China (Shanghai 2) [https] 24: China (Shenzhen) [https] 25: Colombia (Cali) [https] 26: Costa Rica [https] 27: Cyprus [https] 28: Czech Republic [https] 29: Denmark [https] 30: East Asia [https] 31: Ecuador (Cuenca) [https] 32: Ecuador (Quito) [https] 33: France (Lyon 1) [https] 34: France (Lyon 2) [https] 35: France (Marseille) [https] 36: France (Paris 1) [https] 37: Germany (Erlangen) [https] 38: Germany (Leipzig) [https] 39: Germany (Göttingen) [https] 40: Germany (Münster) [https] 41: Germany (Regensburg) [https] 42: Greece [https] 43: Hungary [https] 44: Iceland [https] 45: India [https] 46: Indonesia (Banda Aceh) [https] 47: Iran (Mashhad) [https] 48: Italy (Milano) [https] 49: Italy (Padua) [https] 50: Japan (Tokyo) [https] 51: Japan (Yonezawa) [https] 52: Korea (Gyeongsan-si) [https] 53: Korea (Seoul 1) [https] 54: Korea (Ulsan) [https] 55: Malaysia [https] 56: Mexico (Mexico City) [https] 57: Mexico (Texcoco) [https] 58: Morocco [https] 59: Netherlands (Dronten) [https] 60: New Zealand [https] 61: Norway [https] 62: South Africa (Johannesburg) [https] 63: Spain (A Coruña) [https] 64: Spain (Madrid) [https] 65: Sweden (Borås) [https] 66: Sweden (Umeå) [https] 67: Switzerland [https] 68: Taiwan (Taipei) [https] 69: Turkey (Denizli) [https] 70: Turkey (Istanbul) [https] 71: Turkey (Mersin) [https] 72: UK (Bristol) [https] 73: UK (London 1) [https] 74: USA (IA) [https] 75: USA (MI) [https] 76: USA (OH) [https] 77: USA (OR) [https] 78: USA (TN) [https] 79: USA (TX 1) [https] 80: Uruguay [https] 81: (other mirrors)
Selection: 77 also installing the dependencies ‘RxODE’, ‘symengine’
https://ftp.osuosl.org/pub/cran/src/contrib/RxODE_1.1.5.tar.gz' Content type 'application/x-gzip' length 3329498 bytes (3.2 MB)
trying URL 'downloaded 3.2 MB
https://ftp.osuosl.org/pub/cran/src/contrib/symengine_0.2.1.tar.gz' Content type 'application/x-gzip' length 811468 bytes (792 KB)
trying URL 'downloaded 792 KB
https://ftp.osuosl.org/pub/cran/src/contrib/nlmixr_2.0.7.tar.gz' Content type 'application/x-gzip' length 1370102 bytes (1.3 MB)
trying URL 'downloaded 1.3 MB
- installing source package ‘RxODE’ ... ** package ‘RxODE’ successfully unpacked and MD5 sums checked ** using staged installation --------[begin src/Makevars]--------
-- mode: makefile-gmake --
ARMA=/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include BH=/usr/lib/R/library/BH/include RCPP=/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/Rcpp/include EG=/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include SH=-isystem'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include/src' CXX_STD = CXX14 CXX14STD = -std=gnu++14
################################################################################
Package library flags.
PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) $(SHLIB_OPENMP_CXXFLAGS)
Release options
PKG_CFLAGS = -D_isRxODE_
PKG_CXXFLAGS = (SHLIB_OPENMP_CXXFLAGS) -D_isRxODE_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -isystem"
(BH)" -isystem"$(EG)" (SH) -isystem"
(RCPP)" -isystem"$(ARMA)"
SOURCES_C = strncmp.c call_dvode.c handle_evid.c checkmate_stub.c print_node.c genModelVars.c codegen.c getOption.c sbuf.c parseLinCmt.c tran.c lincmt.c utilc.c dop853.c omegaChol.c init.c cfode.c common.c corfailure.c correction.c daxpy.c ddot.c dgefa.c dgesl.c dscal.c fnorm.c idamax.c intdy.c lsoda.c methodswitch.c orderswitch.c prja.c scaleh.c solsy.c stoda.c vmnorm.c strdup_printf.c rprintf.c box.c matexp_HM98.c SOURCES_CPP = rxvandercorput.cpp seed.cpp rxthreefry.cpp cbindThetaOmega.cpp cvPost.cpp checkmate.cpp utilcpp.cpp qs.cpp rxData.cpp lincmtB.cpp par_solve.cpp etTran.cpp forder.cpp et.cpp boost.cpp fast_factor.cpp expandGrid.cpp RcppExports.cpp WinDrive.cpp rxInv.cpp rxStack.cpp rxOptRep.cpp expm.cpp SOURCES_FORTAN = dlsoda.f opkda2.f matexp.f dsphiv.f dgpadm.f
OBJECTS = $(SOURCES_C:.c=.o) $(SOURCES_CPP:.cpp=.o) $(SOURCES_FORTAN:.f=.o)
.PHONY: all all: $(SHLIB)
--------[end src/Makevars]-------- --------[begin R/RxODE_md5.R]-------- RxODE.md5 <- "141af4b61710b1fedbdf88a29d7e093b"
--------[end R/RxODE_md5.R]-------- ** libs gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c strncmp.c -o strncmp.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c call_dvode.c -o call_dvode.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c handle_evid.c -o handle_evid.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c checkmate_stub.c -o checkmate_stub.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c print_node.c -o print_node.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c genModelVars.c -o genModelVars.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c codegen.c -o codegen.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c getOption.c -o getOption.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c sbuf.c -o sbuf.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c parseLinCmt.c -o parseLinCmt.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c tran.c -o tran.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c lincmt.c -o lincmt.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c utilc.c -o utilc.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c dop853.c -o dop853.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c omegaChol.c -o omegaChol.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c init.c -o init.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c cfode.c -o cfode.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c common.c -o common.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c corfailure.c -o corfailure.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c correction.c -o correction.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c daxpy.c -o daxpy.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c ddot.c -o ddot.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c dgefa.c -o dgefa.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c dgesl.c -o dgesl.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c dscal.c -o dscal.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c fnorm.c -o fnorm.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c idamax.c -o idamax.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c intdy.c -o intdy.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c lsoda.c -o lsoda.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c methodswitch.c -o methodswitch.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c orderswitch.c -o orderswitch.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c prja.c -o prja.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c scaleh.c -o scaleh.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c solsy.c -o solsy.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c stoda.c -o stoda.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c vmnorm.c -o vmnorm.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c strdup_printf.c -o strdup_printf.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c rprintf.c -o rprintf.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c box.c -o box.o gcc -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -D_isRxODE_ -fpic -O2 -fomit-frame-pointer -flto -c matexp_HM98.c -o matexp_HM98.o g++ -std=gnu++14 -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -fopenmp -D_isRxODE_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -isystem"/usr/lib/R/library/BH/include" -isystem"/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include" -isystem'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include/src' -isystem"/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/Rcpp/include" -isystem"/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include" -fpic -O2 -fomit-frame-pointer -D__MUSL__ -flto -c rxvandercorput.cpp -o rxvandercorput.o g++ -std=gnu++14 -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -fopenmp -D_isRxODE_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -isystem"/usr/lib/R/library/BH/include" -isystem"/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include" -isystem'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include/src' -isystem"/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/Rcpp/include" -isystem"/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include" -fpic -O2 -fomit-frame-pointer -D__MUSL__ -flto -c seed.cpp -o seed.o g++ -std=gnu++14 -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -fopenmp -D_isRxODE_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -isystem"/usr/lib/R/library/BH/include" -isystem"/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include" -isystem'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include/src' -isystem"/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/Rcpp/include" -isystem"/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include" -fpic -O2 -fomit-frame-pointer -D__MUSL__ -flto -c rxthreefry.cpp -o rxthreefry.o g++ -std=gnu++14 -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -fopenmp -D_isRxODE_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -isystem"/usr/lib/R/library/BH/include" -isystem"/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include" -isystem'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include/src' -isystem"/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/Rcpp/include" -isystem"/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include" -fpic -O2 -fomit-frame-pointer -D__MUSL__ -flto -c cbindThetaOmega.cpp -o cbindThetaOmega.o g++ -std=gnu++14 -I"/usr/include/R" -DNDEBUG -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/dparser/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/PreciseSums/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/sitmo/include' -I'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include' -I'/usr/lib/R/library/BH/include' -O2 -fomit-frame-pointer -fopenmp -D_isRxODE_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -isystem"/usr/lib/R/library/BH/include" -isystem"/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppEigen/include" -isystem'/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/StanHeaders/include/src' -isystem"/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/Rcpp/include" -isystem"/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RcppArmadillo/include" -fpic -O2 -fomit-frame-pointer -D__MUSL__ -flto -c cvPost.cpp -o cvPost.o cvPost.cpp:7:10: fatal error: libintl.h: No such file or directory 7 | #include <libintl.h> | ^~~~~~~~~~~ compilation terminated. make: *** [/usr/lib/R/etc/Makeconf:177: cvPost.o] Error 1 ERROR: compilation failed for package ‘RxODE’
- removing ‘/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/RxODE’
- installing source package ‘symengine’ ... ** package ‘symengine’ successfully unpacked and MD5 sums checked ** using staged installation ====== configuring symengine R package ====== == current working directory /tmp/RtmpfFLIGl/R.INSTALL3d7421f6f579/symengine == /bin/ash == cmake: cmake is not in PATH, try looking for /Applications/CMake.app/Contents/bin/cmake cmake can not be found ERROR: configuration failed for package ‘symengine’
- removing ‘/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/symengine’ ERROR: dependencies ‘RxODE’, ‘symengine’ are not available for package ‘nlmixr’
- removing ‘/home/deepdark/R/x86_64-pc-linux-musl-library/4.2/nlmixr’
The downloaded source packages are in ‘/tmp/RtmpdpPEND/downloaded_packages’ Warning messages: 1: In install.packages("nlmixr") : installation of package ‘RxODE’ had non-zero exit status 2: In install.packages("nlmixr") : installation of package ‘symengine’ had non-zero exit status 3: In install.packages("nlmixr") : installation of package ‘nlmixr’ had non-zero exit status
`