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community/flatpak: fix crash when using flatpak --user

Hugo Barrera requested to merge WhyNotHugo/aports:flatpak into master

When trying to use flatpak --user, it crashes with the following error:

error: While opening repository /var/lib/flatpak/repo: opening repo: opendir(/var/lib/flatpak/repo): No such file or directory

Two specific directories and a config file must be present, but nothing creates them.

Include these directory along with a minimal configuration in this package, so that --user works out of the box.

See: https://github.com/flatpak/flatpak/issues/5488

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