testing/py-h5py: rebuild against hdf5-1.10.5

testing/py-h5py/APKBUILD

@@ -3,7 +3,7 @@
 pkgname=py-h5py
 _pkgname=h5py
 pkgver=2.9.0
-pkgrel=0
+pkgrel=1
 pkgdesc="Read and write HDF5 files from Python"
 # ERROR: test_exc (h5py.tests.old.test_group.TestLen)
 # len() on closed group gives ValueError
@@ -14,9 +14,16 @@ license="BSD-3-Clause"
 depends="py-six py-numpy hdf5"
 makedepends="cython python2-dev python3-dev hdf5-dev py-setuptools py-numpy-dev"
 subpackages="py2-${pkgname#py-}:_py2 py3-${pkgname#py-}:_py3"
-source="https://files.pythonhosted.org/packages/source/${_pkgname:0:1}/$_pkgname/$_pkgname-$pkgver.tar.gz"
+source="https://files.pythonhosted.org/packages/source/${_pkgname:0:1}/$_pkgname/$_pkgname-$pkgver.tar.gz
+	hdf5-1.10.5.patch
+	"
 builddir="$srcdir/$_pkgname-$pkgver"
 
+prepare() {
+	default_prepare
+	sed -i "s/settings\\['runtime_library_dirs'\\] = settings\\['library_dirs'\\]/pass/" setup_build.py
+}
+
 build() {
 	python2 setup.py build
 	python3 setup.py build
@@ -51,4 +58,5 @@ _py() {
 	$python setup.py install --prefix=/usr --root="$subpkgdir"
 }
 
-sha512sums="73b1f59e3e2b3eceebf7b97e49bd8f5199afafd7ef29917af05ff8415c2f2129a5c59db9658944370c9bcf8fc04ab26948ee27fc6fd948a22d19cace1ce8c853  h5py-2.9.0.tar.gz"
+sha512sums="73b1f59e3e2b3eceebf7b97e49bd8f5199afafd7ef29917af05ff8415c2f2129a5c59db9658944370c9bcf8fc04ab26948ee27fc6fd948a22d19cace1ce8c853  h5py-2.9.0.tar.gz
+8fbe88cb9aeda00702402bf10c9719d1b038f63cb788ee32639306cda26aa97f5e854ad8a0aea1d06262ed3b6df1ff4c002297565ddaade4a2865fa8beb1ef53  hdf5-1.10.5.patch"

testing/py-h5py/hdf5-1.10.5.patch

+From 141eafa531c6c09a06efe6a694251a1eea84908d Mon Sep 17 00:00:00 2001
+From: Thomas A Caswell <tcaswell@bnl.gov>
+Date: Sun, 17 Mar 2019 16:57:16 -0400
+Subject: [PATCH] TST: bump skip version on attrs test
+
+We are exercising a bug in hdf5, projected to be fixed in 1.10.6 and
+1.12.0
+
+closes #1180
+---
+ h5py/tests/old/test_attrs.py | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/h5py/tests/old/test_attrs.py b/h5py/tests/old/test_attrs.py
+index d2e0ab59..46b20e8e 100644
+--- a/h5py/tests/old/test_attrs.py
++++ b/h5py/tests/old/test_attrs.py
+@@ -178,7 +178,7 @@ def fill_attrs(self, track_order):
+             attrs[str(i)] = i
+         return attrs
+ 
+-    @ut.skipUnless(h5py.version.hdf5_version_tuple >= (1, 10, 5), 'HDF5 1.10.5 required')
++    @ut.skipUnless(h5py.version.hdf5_version_tuple >= (1, 10, 6), 'HDF5 1.10.6 required')
+     # https://forum.hdfgroup.org/t/bug-h5arename-fails-unexpectedly/4881
+     def test_track_order(self):
+         attrs = self.fill_attrs(track_order=True)  # creation order
+