db: remove AT_SYMLINK_NOFOLLOW for directory permissions
fchmodat does not support this flag - symlinks do not have permissions. Sysadmin probably does not expect us to not follow symlinks either: if /var -> /mnt/foo/var, we should be making sure the permissions and ownership is correct on the target directory, not on the symlink. Since fchmodat never returned ENOENT with AT_SYMLINK_NOFOLLOW, this also fixes directory re-creation if it does not exist. fixes #1348.
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